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- Description:
- This dataset is a custom Kraken2 formatted database for the identification of Fungi from shotgun metagenomic data. Kraken2 is a k-mer based read classifier (Wood et al. 2019; https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1891-0). The dataset was built with the default k-mer length (k=35) from all publicly available fungal genomes at JGI Mycocosm ( https://mycocosm.jgi.doe.gov/mycocosm/home), and all archaea, bacteria, viral, plasmid, human, fungi, plant, and protozoa genomes, as well as the UniVec Core and nt reference database at NCBI ( https://www.ncbi.nlm.nih.gov/). The reference genomes and sequences were downloaded from JGI and NCBI in March 2020.
- Keyword:
- protozoa, Kraken2 database, plant, bacteria, genomes, fungi, human, archaea, plasmid, and virus
- Subject:
- Mycology and Genomics
- Creator:
- Dentinger, Bryn T. M.
- Owner:
- Bryn Dentinger
- Language:
- English
- Date Uploaded:
- 06/08/2022
- Date Modified:
- 06/03/2024
- Date Created:
- 2020-03-29
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Software or Program Code and Dataset
- Identifier:
- https://doi.org/10.7278/S50d-154b-fppf
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- Description:
- This dataset contains the materials necessary to reproduce the study submitted to Remote Sensing: "Tradeoffs Between UAS Spatial Resolution and Accuracy for Deep Learning Semantic Segmentation Applied to Wetland Vegetation Species Mapping". This includes the raw imagery output from the camera aboard the unoccupied aerial vehicle, the Red-Edge MX, captured over the Howard Slough Waterfowl Management Area, Utah, in August of 2020, resampled images, code to resample the images, a link to ground reference data, and the training and testing data used for the convolutional neural network in the study.
- Keyword:
- invasive species, wetlands, phragmites australis, Howard Slough Waterfowl Management Area, multispectral imagery, remote sensing, and uncrewed aerial systems
- Subject:
- geography
- Creator:
- Saltiel, Troy M., Campbell, Michael J., Thompson, Thomas R., Hambrecht, Keith R., and Dennison, Philip E.
- Contributor:
- Christian Hardwick (Utah Geological Survey)
- Owner:
- Based Near Label Tesim:
- Howard Slough Waterfowl Management Area, Utah, United States
- Language:
- English
- Date Uploaded:
- 04/21/2022
- Date Modified:
- 12/05/2023
- Date Created:
- 2020-08-11
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-h9z0-5ft8
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- Description:
- This dataset accompanies the research article entitled, "Ground Motion Amplification at Natural Rock Arches in the Colorado Plateau ," where we analyzed 13 sandstone arches in Utah, computing site-to-reference spectral amplitude ratios from continuous ambient seismic data and comparing these to spectral ratios during earthquakes and teleseismic activity. Included in this dataset are the arch vibration data.
- Keyword:
- earthquakes, geology, rock arches, spectral amplification , environmental seismology, and Utah
- Subject:
- seismology and geology
- Creator:
- Bessette-Kirton, Erin K., Finnegan, Riley, Dzubay, Alex, Moore, Jeffrey R., and Geimer, Paul R.
- Owner:
- Riley Finnegan
- Based Near Label Tesim:
- Utah, Utah, United States
- Language:
- English
- Date Uploaded:
- 04/07/2022
- Date Modified:
- 12/06/2023
- Date Created:
- 2015–01-01 to 2021-12-31
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
-
- Description:
- We discuss a new set of ~ 500 numerical n-body calculations designed to constrain the masses and bulk densities of Styx, Nix, Kerberos, and Hydra. Comparisons of different techniques for deriving the semimajor axis and eccentricity of the four satellites favor methods relying on the theory of Lee & Peale (2006), where satellite orbits are derived in the context of the restricted three body problem (Pluto, Charon, and one massless satellite). In each simulation, we adopt the nominal satellite masses derived in Kenyon & Bromley (2019b), multiply the mass of at least one satellite by a numerical factor f >= 1, and establish whether the system ejects at least one satellite on a time scale <= 4.5~Gyr. When the total system mass is large (f >> 1), ejections of Kerberos are more common. Systems with lower satellite masses (f ~ 1) usually eject Styx. In these calculations, Styx often signals an ejection by moving to higher orbital inclination long before ejection; Kerberos rarely signals in a useful way. The n-body results suggest that Styx and Kerberos are more likely to have bulk densities comparable with water ice, rho_SK <= 2 g/cm^3, than with rock. A strong upper limit on the total system mass, M_SNKH <= 9.5 x 10^19 g, also places robust constraints on the average bulk density of the four satellites, rho_SNKH <= 1.4 g/cm^3. These limits support models where the satellites grow out of icy material ejected during a major impact on Pluto or Charon.
- Keyword:
- Nix, dynamic evolution, satellites , Hydra, Styx, Charon, model, Pluto, planets, and Kerberos
- Subject:
- Astrophysics
- Creator:
- Kenyon, Scott and Bromley, Benjamin
- Owner:
- BENJAMIN BROMLEY
- Based Near Label Tesim:
- United States, , United States
- Date Uploaded:
- 04/01/2022
- Date Modified:
- 12/06/2023
- Date Created:
- 2019-05-15 to 2022-03-25
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-5g6f-yfc5
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- Description:
- Detailed ground-based observations of snow are scarce in remote regions such as the Arctic. Here, Multi-Angle Snowflake Camera (MASC) measurements of over 55,000 solid hydrometeors — obtained during a two-year period from August 2016 to August 2018 at Oliktok Point, Alaska — are analyzed and compared to similar measurements from an earlier experiment at Alta, Utah. In general, distributions of hydrometeor fall speed, fall orientation, aspect ratio, flatness, and complexity (i.e., riming degree) were observed to be very similar between the two locations, except that Arctic hydrometeors tended to be smaller. In total, the slope parameter defining a negative exponential of the size distribution was approximately 50% steeper in the Arctic as at Alta. 66% of particles were observed to be rimed or moderately rimed, with some suggestion that riming is favored by weak boundary layer stability. On average, the fall speed of rimed particles was not notably different from aggregates. However, graupel density and fall speed increase as cloud temperatures approach the melting point.
- Keyword:
- Oliktok Point, Alaska, hydrometeor fall orientation, Alta, fhydrometeor latness, snow, hydrometeor aspect ratio, hydrometeors, hydrometeor complexity, and hydrometeor fall speed
- Subject:
- Atmospheric Science
- Creator:
- Fitch, Kyle E. and Garrett, Timothy J.
- Owner:
- Based Near Label Tesim:
- Oliktok Point, Alaska, United States and Alta, Utah, United States
- Date Uploaded:
- 02/06/2022
- Date Modified:
- 06/03/2024
- Date Created:
- 2013-01-07 to 2013-04-22
- License:
- CC BY – Allows others to use and share your data, even commercially, with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-0nmg-6bs4
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- Description:
- This dataset includes a 3-D model of the Courthouse Mesa toppling rock slab instability in Utah. These data were used in conjunction with ambient seismic array data to conduct modal analyses and improve the structural characterization of the rock slope instability. Data include a 3-D model of the rock slope instability (.stl) and a COMSOL Multiphysics project file showing the boundary conditions and solutions of the best model run (.mph). This dataset accompanies the research article entitled "Rock slope instability structural characterization using array-based modal analysis."
- Keyword:
- numerical model analysis, finite element model, rock slope instability, and structural characterization
- Subject:
- seismology, geology, and engineering geologists
- Creator:
- Finnegan, Riley, Geimer, Paul R. , Häusler, Mauro, Dzubay, Alex, Bessette-Kirton, Erin K., and Moore, Jeffrey R.
- Owner:
- Erin Jensen
- Based Near Label Tesim:
- Moab, Utah, United States
- Language:
- English
- Date Uploaded:
- 12/13/2021
- Date Modified:
- 12/06/2023
- Date Created:
- 2018-01-01 to 2021-12-31
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-f88b-n2y0
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- Description:
- The similar orbital distances and incidence rates of debris disks and the prominent rings observed in protoplanetary disks suggest a potential connection between these structures. We explore this connection with new calculations that follow the evolution of rings of pebbles and planetesimals as they grow into planets and generate dusty debris. Depending on the initial solid mass and planetesimal formation efficiency, the calculations predict diverse outcomes for the resulting planet masses and accompanying debris signature. When compared with debris disk incidence rates as a function of luminosity and time, the model results indicate that the known population of bright cold debris disks can be explained by rings of solids with the (high) initial masses inferred for protoplanetary disk rings and modest planetesimal formation efficiencies that are consistent with current theories of planetesimal formation. These results support the possibility that large protoplanetary disk rings evolve into the known cold debris disks. The inferred strong evolutionary connection between protoplanetary disks with large rings and mature stars with cold debris disks implies that the remaining majority population of low-mass stars with compact protoplanetary disks leave behind only modest masses of residual solids at large radii and evolve primarily into mature stars without detectable debris beyond 30 au. The approach outlined here illustrates how combining observations with detailed evolutionary models of solids strongly constrains the global evolution of disk solids and underlying physical parameters such as the efficiency of planetesimal formation and the possible existence of invisible reservoirs of solids in protoplanetary disks.
- Keyword:
- model, low-mass stars, debris disks, planetesimals, protoplanetary disks, ring of pebbles, and planet formation
- Subject:
- Astronomy
- Creator:
- Kenyon, Scott, Najita, Joan, and Bromley, Ben
- Owner:
- BENJAMIN BROMLEY
- Based Near Label Tesim:
- Goddard, Maryland, United States
- Language:
- English
- Date Uploaded:
- 10/01/2021
- Date Modified:
- 06/03/2024
- Date Created:
- 2020-06-01 to 2021-09-28
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
-
- Description:
- This dataset accompanies the research article entitled, "Ambient vibration modal analysis of natural rock towers and fins," where we investigate the ambient vibrations of 14 rock rowers and perform modal analysis on 3D models of the landforms. Included are the vibration data and 3D models.
- Keyword:
- modal analysis, geology, Utah, photogrammetry, sandstone, conglomerate, resonance, environmental seismology, and rock towers
- Subject:
- geology and seismology
- Creator:
- Bodtker, Jackson, Bessette-Kirton, Erin K., Dzubay, Alex, Vollinger, Kathryn, Geimer, Paul R., Moore, Jeffrey R., and Finnegan, Riley
- Owner:
- BRANDON PATTERSON
- Based Near Label Tesim:
- Utah, Utah, United States
- Language:
- English
- Date Uploaded:
- 09/17/2021
- Date Modified:
- 12/07/2023
- Date Created:
- 2018-01-01 to 2021-09-17
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50D-N12Q-SA1Z
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- Description:
- This dataset encompasses the valid, completed, and qualitative data collected during the 2021 “Survey of Anime Convention Attendance in Response to Covid-19.” This survey was distributed online through social media platforms, community spaces, and industry listservs/resources in order to reach organizers, attendees, and fans of anime conventions (i.e., “cons”). The survey was intended to discover how those who attend anime conventions (i.e., "con-goers") have been experiencing changes in the anime convention scene during the COVID-19 pandemic, particularly in 2020-2021. Traditionally, anime cons and con-related activities such as cosplay (dressing up as a favorite character) are held in person. However, in 2020-2021, most cons have been cancelled or moved online; this is the first time in over 40 years, in the US and worldwide, that the anime convention scene has been so quiet. With this survey, investigators sought to capture firsthand impressions of this unprecedented moment, learning how con-goers were experiencing these changes and whether they had safety or other concerns about anime cons returning in late 2021 and early 2022.
- Keyword:
- anime, COVID-19, consumer studies, anime conventions, popular culture, pandemic, consumers, conventions, and fans
- Subject:
- Popular Culture
- Creator:
- Alberto, Maria and Tringali, Billy
- Owner:
- Language:
- English
- Date Uploaded:
- 09/16/2021
- Date Modified:
- 06/03/2024
- Date Created:
- 2021-05-01 to 2021-09-01
- License:
- CC BY – Allows others to use and share your data, even commercially, with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50D-8FF8-NT67
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- Description:
- Classification of barrier island morphology stems from the seminal work of M. O. Hayes and others, which linked island shape to tidal range and wave height and defined coastal energy regimes (i.e., wave-dominated, mixed energy, tide-dominated). If true, this general relationship represents a process-based framework to link modern and ancient systems, and is key for determining paleomorphodynamic relationships. Here we present a new semi-global database of barrier islands and spits (n = 702). Shape parameters (aspect, circularity, and roundness) are used to quantify island boundary shape, and assess potential correlation with coastal energy regime using global wave and tide models. In adopting the original energy classification as originally put forth (i.e., wave dominated, wave-influenced mixed, tide-influenced mixed, tide dominated), results show that wave-dominated islands have statistically different mean shape values from those in the mixed energy fields, but the two mixed energy designations are not distinct from each other. Furthermore, each energy regime field contains a wide range of island shapes, with no clear trends present. Linear regression modeling shows that tidal range and wave height account for < 10% of the documented variance in island shape, a strong indication that other controls must be considered. Therefore, while energy regime distinctions can be used descriptively, their utility in predicting and constraining island shape is limited: barrier island shape is not indicative of coastal energy regime, and vice versa. Our analysis also demonstrates empirical scaling relationships among modern barrier islands for the first time, with implications for subsurface prediction. and This is the dataset of the Modern Barrier Island Database published in Mulhern et al., 2017 Marine Geology paper titled "Is Barrier Island Morphology a Function of Wave and Tide Regime?" with the DOI https://doi.org/10.1016/j.margeo.2017.02.016. If using this dataset please cite both the dataset and the paper.
- Keyword:
- paleomorphodynamic relationships, geology, barrier island, shallow marine, island shape, wave-dominated islands, shoreline morphology, Modern Barrier Island Database, and coastal geomorphology
- Subject:
- Geology
- Creator:
- Johnson, Cari L., Mulhern, Julia S., and Martin, John M.
- Owner:
- Julia Mulhern
- Language:
- English
- Date Uploaded:
- 09/08/2021
- Date Modified:
- 06/03/2024
- Date Created:
- 2015-01-01 to 2017-12-31
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-5pzj-r9vr