This dataset is a custom Kraken2 formatted database for the identification of Fungi from shotgun metagenomic data. Kraken2 is a k-mer based read classifier (Wood et al. 2019;  https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1891-0). The dataset was built with the default k-mer length (k=35) from all publicly available fungal genomes at JGI Mycocosm ( https://mycocosm.jgi.doe.gov/mycocosm/home), and all archaea, bacteria, viral, plasmid, human, fungi, plant, and protozoa genomes, as well as the UniVec Core and nt reference database at NCBI ( https://www.ncbi.nlm.nih.gov/). The reference genomes and sequences were downloaded from JGI and NCBI in March 2020.

Last modified

• 06/03/2024

Creator

• Dentinger, Bryn T. M.

Subject

• Mycology
• Genomics

Language

• English

Identifier

• https://doi.org/10.7278/S50d-154b-fppf

Keyword

• protozoa
• Kraken2 database
• plant
• bacteria
• genomes
• fungi
• human
• archaea
• plasmid
• virus

Date created

• 2020-03-29

Resource type

• Software or Program Code
• Dataset

Source

• Library of Congress Subject Headings (LCSH)

License

• CC BY NC - Allows others to use and share your data non-commercially and with attribution.